Pairwise fitting pdb-3dg4 on pdb-4v4b by gmfit



Pairwise fitting of target pdb-3dg4 on reference pdb-4v4b by gmfit(PID:4115186).

RANK[1] Corr.Coeff:0.834 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(pdb-4v4b)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.834 0.751 0.730 0.727 0.721 0.721 0.706 0.690 0.688 0.685

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v4b"(PDB-format) or "4v4b"(mmCIF-format), and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.746090,0.610368,0.266083 6.582912 center 0,0,0 model #1
    move -9.370093,-5.184776,-6.506564 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v4b)] [Download the target GMM(pdb 3dg4)] [Download gmfit result file(4115186)]