Pairwise fitting pdb-3dg4 on emdb-5843 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-5843 by gmfit(PID:4058005).

RANK[1] Corr.Coeff:0.894 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-5843)
display:
color:
EttA-bound E. coli 70S ribosome complex (raw map) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.894 0.890 0.721 0.700 0.693 0.682 0.661 0.660 0.655 0.643

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5843.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.702257,-0.711921,-0.001894 174.697707 center 0,0,0 model #1
    move 182.495752,181.639988,189.492676 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5843)] [Download the target GMM(pdb 3dg4)] [Download gmfit result file(4058005)]