Pairwise fitting pdb-3dg4 on emdb-5784 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-5784 by gmfit(PID:4119675).

RANK[1] Corr.Coeff:0.901 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-5784)
display:
color:
EttA-bound E. coli 70S ribosome complex containing P-site tRNA and A-site tRNA [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.901 0.899 0.745 0.721 0.718 0.690 0.686 0.685 0.674 0.669

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5784.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.612708,0.786526,-0.077238 5.531710 center 0,0,0 model #1
    move -0.094112,0.041739,-8.009260 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5784)] [Download the target GMM(pdb 3dg4)] [Download gmfit result file(4119675)]