Pairwise fitting pdb-3dg4 on emdb-5562 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-5562 by gmfit(PID:1380864).





RANK[1] Corr.Coeff:0.901

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-5562)

display:



color:


tetracycline resistance protein Tet(O) bound to the ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.901
0.865
0.749
0.728
0.726
0.715
0.696
0.690
0.690
0.682







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5562.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.707698,-0.705767,0.032497 177.567613 center 0,0,0 model #1
move 181.681542,177.737671,187.837619 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5562)]

[Download the target GMM(pdb 3dg4)]

[Download gmfit result file(1380864)]