Pairwise fitting pdb-3dg4 on emdb-4126 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-4126 by gmfit(PID:4168044).

RANK[1] Corr.Coeff:0.918 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-4126)
display:
color:
Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.918 0.772 0.765 0.737 0.734 0.713 0.711 0.710 0.698 0.696

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_4126.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.787777,-0.163909,0.593752 129.778361 center 0,0,0 model #1
    move 161.786233,156.475891,161.594480 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 4126)] [Download the target GMM(pdb 3dg4)] [Download gmfit result file(4168044)]