Pairwise fitting pdb-3dg4 on emdb-3492 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-3492 by gmfit(PID:4186275).





RANK[1] Corr.Coeff:0.905

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-3492)

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Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.905
0.769
0.759
0.731
0.723
0.706
0.684
0.684
0.684
0.683







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3492.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.474228,-0.684193,-0.554065 113.453239 center 0,0,0 model #1
move 216.487209,211.945965,208.861254 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 3492)]

[Download the target GMM(pdb 3dg4)]

[Download gmfit result file(4186275)]