Pairwise fitting pdb-3dg4 on emdb-3146 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-3146 by gmfit(PID:4093989).

RANK[1] Corr.Coeff:0.796 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-3146)
display:
color:
Mechanism of eIF6 release from the nascent 60S ribosomal subunit [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.796 0.769 0.766 0.751 0.750 0.741 0.738 0.738 0.736 0.721

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3146.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.807129,-0.285104,-0.516970 134.926612 center 0,0,0 model #1
    move 200.871699,207.011117,201.657038 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 3146)] [Download the target GMM(pdb 3dg4)] [Download gmfit result file(4093989)]