Pairwise fitting pdb-3dg4 on emdb-3034 by gmfit



Pairwise fitting of target pdb-3dg4 on reference emdb-3034 by gmfit(PID:4118052).

RANK[1] Corr.Coeff:0.706 [JSmol] [Molmil]
TARGET(pdb-3dg4)
display:
color:
b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1- ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-3dg4)]
REFERENCE(emdb-3034)
display:
color:
Structure of the 26S proteasome-Ubp6 complex [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.706 0.673 0.652 0.647 0.631 0.629 0.606 0.599 0.592 0.584

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3034.map.gz", and read it.
  2. Download the Target molecule "3dg4"(PDB-format) or "3dg4"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.876751,-0.480413,0.022586 41.166492 center 0,0,0 model #1
    move 162.486485,309.202328,280.336643 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 3034)] [Download the target GMM(pdb 3dg4)] [Download gmfit result file(4118052)]