Pairwise fitting pdb-3dg4 on emdb-1850 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-1850 by gmfit(PID:11238).





RANK[1] Corr.Coeff:0.892

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-1850)

display:



color:


Near-cognate 70S-TC complex [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.892
0.874
0.750
0.746
0.722
0.713
0.700
0.693
0.688
0.672







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1850.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.990790,-0.118921,-0.064760 3.943377 center 0,0,0 model #1
move -5.476517,-1.236640,-3.344174 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1850)]

[Download the target GMM(pdb 3dg4)]

[Download gmfit result file(11238)]