Pairwise fitting pdb-3dg4 on emdb-1829 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-1829 by gmfit(PID:586217).





RANK[1] Corr.Coeff:0.798

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-1829)

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SecM-stalled ribosomes adopt an altered geometry at the peptidyltransferase center [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.798
0.789
0.748
0.735
0.704
0.696
0.695
0.675
0.661
0.654







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1829.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.010508,0.083869,0.996421 168.663753 center 0,0,0 model #1
move 8.499560,3.088625,-5.036328 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!