Pairwise fitting pdb-2zz9 on pdb-5a6u by gmfit










Pairwise fitting of target pdb-2zz9 on reference pdb-5a6u by gmfit(PID:610560).





RANK[1] Corr.Coeff:0.582

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-2zz9)

display:



color:



b'STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-2zz9)]







REFERENCE(pdb-5a6u)

display:



color:


b'NATIVE MAMMALIAN RIBOSOME-BOUND SEC61 PROTEIN-CONDUCTING CHANNEL IN   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
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Corr.Coeff.
0.582
0.563
0.554
0.551
0.536
0.532
0.525
0.518
0.513
0.502







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5a6u"(PDB-format) or 
 "5a6u"(mmCIF-format), and read it.

  2.  Download the Target molecule "2zz9"(PDB-format) or
  "2zz9"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.630336,-0.695025,-0.345857 93.333860 center 0,0,0 model #1
move 407.985855,345.285985,361.583725 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!