Pairwise fitting pdb-2zz9 on pdb-2i68 by gmfit



Pairwise fitting of target pdb-2zz9 on reference pdb-2i68 by gmfit(PID:4130929).

RANK[1] Corr.Coeff:0.427 [JSmol] [Molmil]
TARGET(pdb-2zz9)
display:
color:
b'STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-2zz9)]
REFERENCE(pdb-2i68)
display:
color:
b'CRYO-EM BASED THEORETICAL MODEL STRUCTURE OF TRANSMEMBRANE DOMAIN OF ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.427 0.424 0.416 0.401 0.396 0.386 0.385 0.385 0.378 0.358

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2i68"(PDB-format) or "2i68"(mmCIF-format), and read it.
  2. Download the Target molecule "2zz9"(PDB-format) or "2zz9"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.478761,0.830797,0.283838 179.828113 center 0,0,0 model #1
    move -74.679254,-76.169249,88.743141 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2i68)] [Download the target GMM(pdb 2zz9)] [Download gmfit result file(4130929)]