Pairwise fitting pdb-2zz9 on pdb-2i68 by gmfit










Pairwise fitting of target pdb-2zz9 on reference pdb-2i68 by gmfit(PID:859735).





RANK[1] Corr.Coeff:0.427

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-2zz9)

display:



color:



b'STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-2zz9)]







REFERENCE(pdb-2i68)

display:



color:


b'CRYO-EM BASED THEORETICAL MODEL STRUCTURE OF TRANSMEMBRANE DOMAIN OF  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.427
0.424
0.416
0.401
0.396
0.386
0.385
0.385
0.378
0.358







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2i68"(PDB-format) or 
 "2i68"(mmCIF-format), and read it.

  2.  Download the Target molecule "2zz9"(PDB-format) or
  "2zz9"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.478761,0.830797,0.283838 179.828113 center 0,0,0 model #1
move -74.679254,-76.169249,88.743141 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 2i68)]

[Download the target GMM(pdb 2zz9)]

[Download gmfit result file(859735)]