Pairwise fitting pdb-2zz9 on pdb-1qzd by gmfit










Pairwise fitting of target pdb-2zz9 on reference pdb-1qzd by gmfit(PID:4091822).





RANK[1] Corr.Coeff:0.616

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-2zz9)

display:



color:



b'STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-2zz9)]







REFERENCE(pdb-1qzd)

display:



color:


b'EF-TU.KIRROMYCIN COORDINATES FITTED INTO THE CRYO-EM MAP OF EF-TU     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
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Corr.Coeff.
0.616
0.614
0.596
0.590
0.588
0.556
0.552
0.550
0.532
0.501







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1qzd"(PDB-format) or 
 "1qzd"(mmCIF-format), and read it.

  2.  Download the Target molecule "2zz9"(PDB-format) or
  "2zz9"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.493900,-0.073628,0.866396 123.911694 center 0,0,0 model #1
move 106.147688,24.223204,-111.178580 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1qzd)]

[Download the target GMM(pdb 2zz9)]

[Download gmfit result file(4091822)]