Pairwise fitting pdb-2zz9 on emdb-5167 by gmfit










Pairwise fitting of target pdb-2zz9 on reference emdb-5167 by gmfit(PID:40829).





RANK[1] Corr.Coeff:0.425

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-2zz9)

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b'STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-2zz9)]







REFERENCE(emdb-5167)

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3D reconstruction of a microtubule decorated with monomeric human kinesin (K349 construct) having ADP aluminum fluoride complex bound in the nucleotide pocket. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.425
0.418
0.408
0.379
0.360
0.360
0.352
0.348
0.341
0.329







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5167.map.gz", and read it.

  2.  Download the Target molecule "2zz9"(PDB-format) or
  "2zz9"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.360193,-0.898879,0.249554 174.592113 center 0,0,0 model #1
move 142.696723,17.796812,192.854253 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5167)]

[Download the target GMM(pdb 2zz9)]

[Download gmfit result file(40829)]