Pairwise fitting pdb-2zz9 on emdb-2866 by gmfit



Pairwise fitting of target pdb-2zz9 on reference emdb-2866 by gmfit(PID:4155874).

RANK[1] Corr.Coeff:0.479 [JSmol] [Molmil]
TARGET(pdb-2zz9)
display:
color:
b'STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-2zz9)]
REFERENCE(emdb-2866)
display:
color:
Reconstruction of nucleoplasmin isolated from egg [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.479 0.422 0.410 0.407 0.400 0.388 0.381 0.369 0.357 0.285

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2866.map.gz", and read it.
  2. Download the Target molecule "2zz9"(PDB-format) or "2zz9"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.330640,-0.692647,-0.641028 107.024584 center 0,0,0 model #1
    move 29.601639,-118.052820,-31.716429 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2866)] [Download the target GMM(pdb 2zz9)] [Download gmfit result file(4155874)]