Pairwise fitting pdb-2zz9 on emdb-2866 by gmfit










Pairwise fitting of target pdb-2zz9 on reference emdb-2866 by gmfit(PID:853815).





RANK[1] Corr.Coeff:0.479

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-2zz9)

display:



color:



b'STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-2zz9)]







REFERENCE(emdb-2866)

display:



color:


Reconstruction of nucleoplasmin isolated from egg [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.479
0.422
0.410
0.407
0.400
0.388
0.381
0.369
0.357
0.285







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2866.map.gz", and read it.

  2.  Download the Target molecule "2zz9"(PDB-format) or
  "2zz9"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.330640,-0.692647,-0.641028 107.024584 center 0,0,0 model #1
move 29.601639,-118.052820,-31.716429 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2866)]

[Download the target GMM(pdb 2zz9)]

[Download gmfit result file(853815)]