Pairwise fitting pdb-2zz9 on emdb-1435 by gmfit










Pairwise fitting of target pdb-2zz9 on reference emdb-1435 by gmfit(PID:21454).





RANK[1] Corr.Coeff:0.429

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-2zz9)

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b'STRUCTURE OF AQUAPORIN-4 S180D MUTANT AT 2.8 A RESOLUTION BY ELECTRON ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-2zz9)]







REFERENCE(emdb-1435)

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Functional architecture of RNA polymerase I. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.429
0.427
0.426
0.426
0.422
0.415
0.415
0.414
0.408
0.397







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1435.map.gz", and read it.

  2.  Download the Target molecule "2zz9"(PDB-format) or
  "2zz9"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.895194,0.443965,-0.039016 82.781359 center 0,0,0 model #1
move -87.482432,113.213043,-48.412388 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1435)]

[Download the target GMM(pdb 2zz9)]

[Download gmfit result file(21454)]