Pairwise fitting pdb-1x18 on pdb-5mg3 by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-5mg3 by gmfit(PID:4124293).

RANK[1] Corr.Coeff:0.586 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-5mg3)
display:
color:
b'EM FITTED MODEL OF BACTERIAL HOLO-TRANSLOCON ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.586 0.581 0.554 0.540 0.511 0.503 0.496 0.487 0.476 0.462

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5mg3"(PDB-format) or "5mg3"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.055715,0.960301,0.273347 128.779542 center 0,0,0 model #1
    move 14.643744,51.766058,63.665953 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5mg3)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4124293)]