Pairwise fitting pdb-1x18 on pdb-5mg3 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-5mg3 by gmfit(PID:4094144).





RANK[1] Corr.Coeff:0.586

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-5mg3)

display:



color:


b'EM FITTED MODEL OF BACTERIAL HOLO-TRANSLOCON                          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.586
0.581
0.554
0.540
0.511
0.503
0.496
0.487
0.476
0.462







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mg3"(PDB-format) or 
 "5mg3"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.055715,0.960301,0.273347 128.779542 center 0,0,0 model #1
move 14.643744,51.766058,63.665953 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5mg3)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4094144)]