Pairwise fitting pdb-1x18 on pdb-4au6 by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-4au6 by gmfit(PID:4094172).

RANK[1] Corr.Coeff:0.607 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-4au6)
display:
color:
b'LOCATION OF THE DSRNA-DEPENDENT POLYMERASE, VP1, IN ROTAVIRUS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.607 0.603 0.591 0.582 0.575 0.570 0.568 0.567 0.557 0.555

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4au6"(PDB-format) or "4au6"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.872618,-0.452415,0.184008 161.911764 center 0,0,0 model #1
    move 147.359585,-7.349018,-88.407799 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4au6)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4094172)]