Pairwise fitting pdb-1x18 on pdb-4au6 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-4au6 by gmfit(PID:4094172).





RANK[1] Corr.Coeff:0.607

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-4au6)

display:



color:


b'LOCATION OF THE DSRNA-DEPENDENT POLYMERASE, VP1, IN ROTAVIRUS         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.607
0.603
0.591
0.582
0.575
0.570
0.568
0.567
0.557
0.555







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4au6"(PDB-format) or 
 "4au6"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.872618,-0.452415,0.184008 161.911764 center 0,0,0 model #1
move 147.359585,-7.349018,-88.407799 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4au6)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4094172)]