Pairwise fitting pdb-1x18 on pdb-3jca by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-3jca by gmfit(PID:4093022).





RANK[1] Corr.Coeff:0.622

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-3jca)

display:



color:


b'CORE MODEL OF THE MOUSE MAMMARY TUMOR VIRUS INTASOME                  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.622
0.595
0.590
0.585
0.534
0.508
0.493
0.483
0.429
0.419







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jca"(PDB-format) or 
 "3jca"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.662528,-0.696189,0.276364 130.075875 center 0,0,0 model #1
move 203.773640,172.045745,254.686651 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3jca)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4093022)]