Pairwise fitting pdb-1x18 on pdb-3jca by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-3jca by gmfit(PID:4093022).

RANK[1] Corr.Coeff:0.622 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-3jca)
display:
color:
b'CORE MODEL OF THE MOUSE MAMMARY TUMOR VIRUS INTASOME ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.622 0.595 0.590 0.585 0.534 0.508 0.493 0.483 0.429 0.419

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3jca"(PDB-format) or "3jca"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.662528,-0.696189,0.276364 130.075875 center 0,0,0 model #1
    move 203.773640,172.045745,254.686651 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3jca)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4093022)]