Pairwise fitting pdb-1x18 on pdb-3jb7 by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-3jb7 by gmfit(PID:4100782).

RANK[1] Corr.Coeff:0.614 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-3jb7)
display:
color:
b'IN SITU STRUCTURES OF THE SEGMENTED GENOME AND RNA POLYMERASE COMPLEX ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.614 0.582 0.575 0.556 0.546 0.533 0.528 0.501 0.443 0.441

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3jb7"(PDB-format) or "3jb7"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.302826,0.857688,-0.415533 77.756753 center 0,0,0 model #1
    move 74.767788,-88.522738,123.225881 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3jb7)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4100782)]