Pairwise fitting pdb-1x18 on pdb-3jb7 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-3jb7 by gmfit(PID:4147571).





RANK[1] Corr.Coeff:0.614

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-3jb7)

display:



color:


b'IN SITU STRUCTURES OF THE SEGMENTED GENOME AND RNA POLYMERASE COMPLEX ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.614
0.582
0.575
0.556
0.546
0.533
0.528
0.501
0.443
0.441







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jb7"(PDB-format) or 
 "3jb7"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.302826,0.857688,-0.415533 77.756753 center 0,0,0 model #1
move 74.767788,-88.522738,123.225881 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3jb7)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4147571)]