Pairwise fitting pdb-1x18 on pdb-3j1t by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-3j1t by gmfit(PID:4131805).

RANK[1] Corr.Coeff:0.621 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-3j1t)
display:
color:
b'HIGH AFFINITY DYNEIN MICROTUBULE BINDING DOMAIN - TUBULIN COMPLEX ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.621 0.556 0.527 0.514 0.501 0.495 0.491 0.490 0.485 0.411

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j1t"(PDB-format) or "3j1t"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.009702,-0.900897,0.433925 120.226093 center 0,0,0 model #1
    move 37.878587,74.534059,107.003354 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j1t)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4131805)]