Pairwise fitting pdb-1x18 on pdb-3j1t by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-3j1t by gmfit(PID:4131805).





RANK[1] Corr.Coeff:0.621

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-3j1t)

display:



color:


b'HIGH AFFINITY DYNEIN MICROTUBULE BINDING DOMAIN - TUBULIN COMPLEX     ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
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Corr.Coeff.
0.621
0.556
0.527
0.514
0.501
0.495
0.491
0.490
0.485
0.411







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j1t"(PDB-format) or 
 "3j1t"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.009702,-0.900897,0.433925 120.226093 center 0,0,0 model #1
move 37.878587,74.534059,107.003354 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j1t)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4131805)]