Pairwise fitting pdb-1x18 on pdb-3eq3 by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-3eq3 by gmfit(PID:4104699).

RANK[1] Corr.Coeff:0.628 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-3eq3)
display:
color:
b'MODEL OF TRNA(TRP)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.628 0.550 0.477 0.455 0.426 0.421 0.410 0.378 0.371 0.353

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3eq3"(PDB-format) or "3eq3"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.933256,-0.280505,0.224388 132.907480 center 0,0,0 model #1
    move 43.065508,54.283340,-11.078859 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3eq3)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4104699)]