Pairwise fitting pdb-1x18 on pdb-3eq3 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-3eq3 by gmfit(PID:4104699).





RANK[1] Corr.Coeff:0.628

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-3eq3)

display:



color:


b'MODEL OF TRNA(TRP)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.628
0.550
0.477
0.455
0.426
0.421
0.410
0.378
0.371
0.353







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3eq3"(PDB-format) or 
 "3eq3"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.933256,-0.280505,0.224388 132.907480 center 0,0,0 model #1
move 43.065508,54.283340,-11.078859 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3eq3)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4104699)]