Pairwise fitting pdb-1x18 on pdb-3bo0 by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-3bo0 by gmfit(PID:4168427).





RANK[1] Corr.Coeff:0.552

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-3bo0)

display:



color:


b'RIBOSOME-SECY COMPLEX                                                 ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.552
0.465
0.451
0.447
0.444
0.428
0.427
0.417
0.401
0.392







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3bo0"(PDB-format) or 
 "3bo0"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.218476,0.915810,-0.336988 175.891368 center 0,0,0 model #1
move -22.984193,22.987672,-24.158786 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3bo0)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4168427)]