Pairwise fitting pdb-1x18 on pdb-2y7c by gmfit



Pairwise fitting of target pdb-1x18 on reference pdb-2y7c by gmfit(PID:4125420).

RANK[1] Corr.Coeff:0.547 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(pdb-2y7c)
display:
color:
b'ATOMIC MODEL OF THE OCR-BOUND METHYLASE COMPLEX FROM THE TYPE I ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.547 0.534 0.494 0.489 0.483 0.480 0.473 0.460 0.429 0.427

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "2y7c"(PDB-format) or "2y7c"(mmCIF-format), and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.958002,0.155646,-0.240845 124.784542 center 0,0,0 model #1
    move 28.907243,-57.747101,63.608735 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 2y7c)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4125420)]