Pairwise fitting pdb-1x18 on pdb-1d3e by gmfit










Pairwise fitting of target pdb-1x18 on reference pdb-1d3e by gmfit(PID:668445).





RANK[1] Corr.Coeff:0.607

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(pdb-1d3e)

display:



color:


b'CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.607
0.511
0.510
0.493
0.491
0.487
0.481
0.464
0.452
0.447







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1d3e"(PDB-format) or 
 "1d3e"(mmCIF-format), and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.682429,0.680676,-0.266402 111.159318 center 0,0,0 model #1
move 9.869004,-66.368196,142.859232 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!