Pairwise fitting pdb-1x18 on emdb-8347 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-8347 by gmfit(PID:4110129).





RANK[1] Corr.Coeff:0.581

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

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b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-8347)

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Cryo-EM Structure of Yeast Pre-40S, Dim1 Local Class [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.581
0.560
0.518
0.451
0.433
0.423
0.417
0.382
0.380
0.350







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8347.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.424660,0.709807,-0.561995 135.068244 center 0,0,0 model #1
move 89.951640,147.653924,237.681443 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 8347)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4110129)]