Pairwise fitting pdb-1x18 on emdb-8347 by gmfit



Pairwise fitting of target pdb-1x18 on reference emdb-8347 by gmfit(PID:4110129).

RANK[1] Corr.Coeff:0.581 [JSmol] [Molmil]
TARGET(pdb-1x18)
display:
color:
b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1x18)]
REFERENCE(emdb-8347)
display:
color:
Cryo-EM Structure of Yeast Pre-40S, Dim1 Local Class [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.581 0.560 0.518 0.451 0.433 0.423 0.417 0.382 0.380 0.350

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8347.map.gz", and read it.
  2. Download the Target molecule "1x18"(PDB-format) or "1x18"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.424660,0.709807,-0.561995 135.068244 center 0,0,0 model #1
    move 89.951640,147.653924,237.681443 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 8347)] [Download the target GMM(pdb 1x18)] [Download gmfit result file(4110129)]