Pairwise fitting pdb-1x18 on emdb-6411 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-6411 by gmfit(PID:656707).





RANK[1] Corr.Coeff:0.563

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-6411)

display:



color:


Structure of PhnGHIJ complex from Escherichia coli [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.563
0.533
0.528
0.524
0.501
0.474
0.450
0.449
0.449
0.443







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6411.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.050501,-0.993555,-0.101483 166.908985 center 0,0,0 model #1
move 34.071702,60.251693,159.577919 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!