Pairwise fitting pdb-1x18 on emdb-5858 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-5858 by gmfit(PID:37799).





RANK[1] Corr.Coeff:0.579

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

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b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-5858)

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color:


Structures of Cas9 endonucleases reveal RNA-mediated conformational activation [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.579
0.439
0.417
0.387
0.366
0.365
0.341
0.336
0.329
0.309







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5858.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.269565,-0.470935,0.839973 62.865909 center 0,0,0 model #1
move 70.240904,45.404361,-20.875764 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5858)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(37799)]