Pairwise fitting pdb-1x18 on emdb-5761 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-5761 by gmfit(PID:4164588).





RANK[1] Corr.Coeff:0.649

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-5761)

display:



color:


Hepatitis C Virus E2 Envelope Glycoprotein Core Structure [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.649
0.546
0.543
0.534
0.531
0.524
0.506
0.483
0.422
0.420







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5761.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.348860,-0.414255,-0.840649 110.110116 center 0,0,0 model #1
move 70.489960,-17.077221,-3.254348 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5761)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4164588)]