Pairwise fitting pdb-1x18 on emdb-3343 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-3343 by gmfit(PID:239029).





RANK[1] Corr.Coeff:0.540

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-3343)

display:



color:


Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.540
0.468
0.467
0.445
0.444
0.444
0.421
0.419
0.417
0.398







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3343.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.598496,-0.345446,-0.722821 126.105825 center 0,0,0 model #1
move 200.579191,111.999967,95.915605 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!