Pairwise fitting pdb-1x18 on emdb-3239 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-3239 by gmfit(PID:626349).





RANK[1] Corr.Coeff:0.539

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



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b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-3239)

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color:


Cryo-EM structure of gamma secretase in class 2 of the apo-state ensemble [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.539
0.519
0.507
0.500
0.482
0.478
0.433
0.406
0.389
0.381







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3239.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.959085,-0.181125,0.217600 164.397749 center 0,0,0 model #1
move 200.989950,172.641228,164.798195 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!