Pairwise fitting pdb-1x18 on emdb-2678 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-2678 by gmfit(PID:4060220).





RANK[1] Corr.Coeff:0.567

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

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b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-2678)

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Three-dimensional structure of human gamma-secretase at 5.4 angstrom resoltuion [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.567
0.515
0.512
0.507
0.452
0.436
0.428
0.414
0.410
0.393







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2678.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.982536,-0.145843,0.115550 170.171463 center 0,0,0 model #1
move 195.492639,172.657347,175.718821 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2678)]

[Download the target GMM(pdb 1x18)]

[Download gmfit result file(4060220)]