Pairwise fitting pdb-1x18 on emdb-1024 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-1024 by gmfit(PID:363021).





RANK[1] Corr.Coeff:0.661

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-1024)

display:



color:


Six molecules of SV40 large T antigen assemble in a propeller-shaped particle around a channel. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.661
0.653
0.648
0.646
0.497
0.493
0.490
0.477
0.466
0.458







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1024.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.222152,-0.093585,0.970510 163.471330 center 0,0,0 model #1
move 64.874364,139.618959,15.822551 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!