Pairwise fitting pdb-1p58 on pdb-5h32 by gmfit



Pairwise fitting of target pdb-1p58 on reference pdb-5h32 by gmfit(PID:4101041).

RANK[1] Corr.Coeff:0.496 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(pdb-5h32)
display:
color:
b'CRYO-EM STRUCTURE OF ZIKA VIRUS COMPLEXED WITH FAB C10 AT PH 5.0 ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.496 0.439 0.430 0.429 0.419 0.418 0.356 0.348 0.344 0.338

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5h32"(PDB-format) or "5h32"(mmCIF-format), and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.075690,0.317818,0.945126 106.619530 center 0,0,0 model #1
    move -224.025461,-218.310302,-303.754126 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5h32)] [Download the target GMM(pdb 1p58)] [Download gmfit result file(4101041)]