Pairwise fitting pdb-1p58 on pdb-4bx4 by gmfit










Pairwise fitting of target pdb-1p58 on reference pdb-4bx4 by gmfit(PID:4100267).





RANK[1] Corr.Coeff:0.589

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(pdb-4bx4)

display:



color:


b'FITTING OF THE BACTERIOPHAGE PHI8 P1 CAPSID PROTEIN INTO CRYO-EM      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.589
0.480
0.474
0.450
0.436
0.403
0.382
0.339
0.326
0.274







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bx4"(PDB-format) or 
 "4bx4"(mmCIF-format), and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.389492,-0.913073,-0.120807 141.791857 center 0,0,0 model #1
move 373.382774,346.220457,377.632805 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4bx4)]

[Download the target GMM(pdb 1p58)]

[Download gmfit result file(4100267)]