Pairwise fitting pdb-1p58 on pdb-4bx4 by gmfit



Pairwise fitting of target pdb-1p58 on reference pdb-4bx4 by gmfit(PID:4100267).

RANK[1] Corr.Coeff:0.589 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(pdb-4bx4)
display:
color:
b'FITTING OF THE BACTERIOPHAGE PHI8 P1 CAPSID PROTEIN INTO CRYO-EM ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.589 0.480 0.474 0.450 0.436 0.403 0.382 0.339 0.326 0.274

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4bx4"(PDB-format) or "4bx4"(mmCIF-format), and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.389492,-0.913073,-0.120807 141.791857 center 0,0,0 model #1
    move 373.382774,346.220457,377.632805 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4bx4)] [Download the target GMM(pdb 1p58)] [Download gmfit result file(4100267)]