Pairwise fitting pdb-1p58 on pdb-3j4k by gmfit










Pairwise fitting of target pdb-1p58 on reference pdb-3j4k by gmfit(PID:21697).





RANK[1] Corr.Coeff:0.605

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(pdb-3j4k)

display:



color:


b'CRYO-EM STRUCTURES OF THE ACTIN:TROPOMYOSIN FILAMENT REVEAL THE       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.605
0.528
0.482
0.468
0.451
0.428
0.416
0.405
0.355
0.327







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j4k"(PDB-format) or 
 "3j4k"(mmCIF-format), and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.409664,0.864436,0.291421 80.330857 center 0,0,0 model #1
move 9.307728,85.475364,161.351122 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j4k)]

[Download the target GMM(pdb 1p58)]

[Download gmfit result file(21697)]