Pairwise fitting pdb-1p58 on emdb-5840 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-5840 by gmfit(PID:4105446).





RANK[1] Corr.Coeff:0.112

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-5840)

display:



color:


Characterization of Human Papilloma Virus Type 16 VLP decorated with antibody fragment H16.V5 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.112
0.063
0.061
0.060
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5840.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.954052,0.217887,-0.205694 156.552779 center 0,0,0 model #1
move 86.046805,154.875338,342.485062 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5840)]

[Download the target GMM(pdb 1p58)]

[Download gmfit result file(4105446)]