Pairwise fitting pdb-1p58 on emdb-5840 by gmfit



Pairwise fitting of target pdb-1p58 on reference emdb-5840 by gmfit(PID:4105446).

RANK[1] Corr.Coeff:0.112 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(emdb-5840)
display:
color:
Characterization of Human Papilloma Virus Type 16 VLP decorated with antibody fragment H16.V5 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.112 0.063 0.061 0.060 0.000 0.000 0.000 0.000 0.000 0.000

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5840.map.gz", and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.954052,0.217887,-0.205694 156.552779 center 0,0,0 model #1
    move 86.046805,154.875338,342.485062 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5840)] [Download the target GMM(pdb 1p58)] [Download gmfit result file(4105446)]