Pairwise fitting pdb-1p58 on emdb-5561 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-5561 by gmfit(PID:1253891).





RANK[1] Corr.Coeff:0.575

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-5561)

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color:


Cryo EM map of the Gaalphaq-PLCbeta3 complex. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.575
0.550
0.522
0.498
0.490
0.486
0.482
0.454
0.447
0.446







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5561.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.591700,0.709214,-0.383285 136.399721 center 0,0,0 model #1
move 11.380038,176.183864,120.230363 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!