Pairwise fitting pdb-1p58 on emdb-5389 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-5389 by gmfit(PID:7751).





RANK[1] Corr.Coeff:0.501

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

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b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-5389)

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An RNA Degradation Machine Sculpted by Ro Autoantigen and Noncoding RNA [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.501
0.471
0.428
0.419
0.405
0.377
0.372
0.365
0.340
0.335







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5389.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.072778,-0.888047,0.453956 176.128086 center 0,0,0 model #1
move 181.993808,340.289253,243.224155 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5389)]

[Download the target GMM(pdb 1p58)]

[Download gmfit result file(7751)]