Pairwise fitting pdb-1p58 on emdb-2467 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-2467 by gmfit(PID:4108894).





RANK[1] Corr.Coeff:0.567

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-2467)

display:



color:


30S Ribosome Subunit Assembly Intermediates, Intermediate Group 3a [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.567
0.532
0.531
0.530
0.526
0.522
0.477
0.472
0.436
0.383







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2467.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.938441,-0.340283,-0.059468 69.726367 center 0,0,0 model #1
move 40.595909,-182.927705,-105.588516 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2467)]

[Download the target GMM(pdb 1p58)]

[Download gmfit result file(4108894)]