Pairwise fitting pdb-1p58 on emdb-2465 by gmfit



Pairwise fitting of target pdb-1p58 on reference emdb-2465 by gmfit(PID:4091668).

RANK[1] Corr.Coeff:0.605 [JSmol] [Molmil]
TARGET(pdb-1p58)
display:
color:
b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1p58)]
REFERENCE(emdb-2465)
display:
color:
30S Ribosome Subunit Assembly Intermediates, Intermediate Group 2b [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.605 0.550 0.547 0.546 0.540 0.531 0.527 0.502 0.398 0.387

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2465.map.gz", and read it.
  2. Download the Target molecule "1p58"(PDB-format) or "1p58"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.617638,-0.285837,-0.732681 19.690827 center 0,0,0 model #1
    move 7.505925,69.024923,-190.204105 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2465)] [Download the target GMM(pdb 1p58)] [Download gmfit result file(4091668)]