Pairwise fitting pdb-1p58 on emdb-1108 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-1108 by gmfit(PID:4192085).





RANK[1] Corr.Coeff:0.507

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-1108)

display:



color:


Structural basis of pore formation by the bacterial toxin pneumolysin. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.507
0.477
0.455
0.440
0.432
0.431
0.428
0.402
0.282
0.264







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1108.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.205758,-0.922881,-0.325507 87.535464 center 0,0,0 model #1
move 245.710762,170.344623,-43.444683 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1108)]

[Download the target GMM(pdb 1p58)]

[Download gmfit result file(4192085)]