Pairwise fitting pdb-1k4r on pdb-5u4w by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-5u4w by gmfit(PID:4115849).





RANK[1] Corr.Coeff:0.336

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-5u4w)

display:



color:


b'CRYO-EM STRUCTURE OF IMMATURE ZIKA VIRUS                              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.336
0.263
0.234
0.231
0.187
0.178
0.175
0.169
0.157
0.156







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5u4w"(PDB-format) or 
 "5u4w"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.911501,0.271641,-0.308833 130.348903 center 0,0,0 model #1
move -179.224992,5.099550,256.891859 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5u4w)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4115849)]