Pairwise fitting pdb-1k4r on pdb-5u4w by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-5u4w by gmfit(PID:4061166).

RANK[1] Corr.Coeff:0.336 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-5u4w)
display:
color:
b'CRYO-EM STRUCTURE OF IMMATURE ZIKA VIRUS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.336 0.263 0.234 0.231 0.187 0.178 0.175 0.169 0.157 0.156

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5u4w"(PDB-format) or "5u4w"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.911501,0.271641,-0.308833 130.348903 center 0,0,0 model #1
    move -179.224992,5.099550,256.891859 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5u4w)] [Download the target GMM(pdb 1k4r)] [Download gmfit result file(4061166)]