Pairwise fitting pdb-1k4r on pdb-5gzr by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-5gzr by gmfit(PID:4093821).





RANK[1] Corr.Coeff:0.502

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-5gzr)

display:



color:


b'ZIKA VIRUS E PROTEIN COMPLEXED WITH A NEUTRALIZING ANTIBODY Z23-FAB   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.502
0.358
0.353
0.325
0.295
0.295
0.289
0.235
0.202
0.190







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5gzr"(PDB-format) or 
 "5gzr"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.970033,-0.190064,-0.151366 163.519734 center 0,0,0 model #1
move 347.172164,381.668062,429.936626 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5gzr)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4093821)]