Pairwise fitting pdb-1k4r on pdb-5gzr by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-5gzr by gmfit(PID:4093821).

RANK[1] Corr.Coeff:0.502 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-5gzr)
display:
color:
b'ZIKA VIRUS E PROTEIN COMPLEXED WITH A NEUTRALIZING ANTIBODY Z23-FAB ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.502 0.358 0.353 0.325 0.295 0.295 0.289 0.235 0.202 0.190

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5gzr"(PDB-format) or "5gzr"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.970033,-0.190064,-0.151366 163.519734 center 0,0,0 model #1
    move 347.172164,381.668062,429.936626 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5gzr)] [Download the target GMM(pdb 1k4r)] [Download gmfit result file(4093821)]