Pairwise fitting pdb-1k4r on pdb-4cau by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-4cau by gmfit(PID:860972).





RANK[1] Corr.Coeff:0.721

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-4cau)

display:



color:


b'THREE-DIMENSIONAL STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.721
0.479
0.434
0.429
0.418
0.411
0.388
0.370
0.260
0.242







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4cau"(PDB-format) or 
 "4cau"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.799374,0.157910,0.579712 6.307543 center 0,0,0 model #1
move -9.393232,19.428332,-4.714287 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4cau)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(860972)]