Pairwise fitting pdb-1k4r on pdb-4cau by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-4cau by gmfit(PID:4157955).

RANK[1] Corr.Coeff:0.721 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-4cau)
display:
color:
b'THREE-DIMENSIONAL STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.721 0.479 0.434 0.429 0.418 0.411 0.388 0.370 0.260 0.242

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4cau"(PDB-format) or "4cau"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.799374,0.157910,0.579712 6.307543 center 0,0,0 model #1
    move -9.393232,19.428332,-4.714287 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4cau)] [Download the target GMM(pdb 1k4r)] [Download gmfit result file(4157955)]