Pairwise fitting pdb-1k4r on pdb-4b03 by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-4b03 by gmfit(PID:4132284).

RANK[1] Corr.Coeff:0.309 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-4b03)
display:
color:
b'6A ELECTRON CRYOMICROSCOPY STRUCTURE OF IMMATURE DENGUE VIRUS SEROTYPE' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.309 0.248 0.233 0.204 0.200 0.181 0.181 0.145 0.137 0.134

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4b03"(PDB-format) or "4b03"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.931162,0.360559,-0.054168 141.181993 center 0,0,0 model #1
    move -19.349030,2.572353,306.451422 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4b03)] [Download the target GMM(pdb 1k4r)] [Download gmfit result file(4132284)]