Pairwise fitting pdb-1k4r on pdb-4b03 by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-4b03 by gmfit(PID:4132284).





RANK[1] Corr.Coeff:0.309

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-4b03)

display:



color:


b'6A ELECTRON CRYOMICROSCOPY STRUCTURE OF IMMATURE DENGUE VIRUS SEROTYPE' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.309
0.248
0.233
0.204
0.200
0.181
0.181
0.145
0.137
0.134







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4b03"(PDB-format) or 
 "4b03"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.931162,0.360559,-0.054168 141.181993 center 0,0,0 model #1
move -19.349030,2.572353,306.451422 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4b03)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4132284)]