Pairwise fitting pdb-1k4r on pdb-4atu by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-4atu by gmfit(PID:4162692).





RANK[1] Corr.Coeff:0.547

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-4atu)

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color:


b'HUMAN DOUBLECORTIN N-DC REPEAT PLUS LINKER, AND TUBULIN (2XRP) DOCKED ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.547
0.519
0.507
0.493
0.360
0.351
0.339
0.337
0.322
0.320







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4atu"(PDB-format) or 
 "4atu"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.676078,0.470344,0.567181 108.802893 center 0,0,0 model #1
move 278.938090,-35.153153,374.717234 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4atu)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4162692)]