Pairwise fitting pdb-1k4r on pdb-4atu by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-4atu by gmfit(PID:4162692).

RANK[1] Corr.Coeff:0.547 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-4atu)
display:
color:
b'HUMAN DOUBLECORTIN N-DC REPEAT PLUS LINKER, AND TUBULIN (2XRP) DOCKED ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.547 0.519 0.507 0.493 0.360 0.351 0.339 0.337 0.322 0.320

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4atu"(PDB-format) or "4atu"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.676078,0.470344,0.567181 108.802893 center 0,0,0 model #1
    move 278.938090,-35.153153,374.717234 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4atu)] [Download the target GMM(pdb 1k4r)] [Download gmfit result file(4162692)]