Pairwise fitting pdb-1k4r on pdb-3zn8 by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-3zn8 by gmfit(PID:4116087).





RANK[1] Corr.Coeff:0.497

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-3zn8)

display:



color:


b'STRUCTURAL BASIS OF SIGNAL SEQUENCE SURVEILLANCE AND SELECTION BY THE ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.497
0.452
0.433
0.397
0.349
0.317
0.314
0.306
0.247
0.205







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3zn8"(PDB-format) or 
 "3zn8"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.524366,-0.353142,0.774810 159.350952 center 0,0,0 model #1
move 615.705078,306.757019,229.914872 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3zn8)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4116087)]