Pairwise fitting pdb-1k4r on pdb-3zn8 by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-3zn8 by gmfit(PID:4088352).

RANK[1] Corr.Coeff:0.497 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-3zn8)
display:
color:
b'STRUCTURAL BASIS OF SIGNAL SEQUENCE SURVEILLANCE AND SELECTION BY THE ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.497 0.452 0.433 0.397 0.349 0.317 0.314 0.306 0.247 0.205

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3zn8"(PDB-format) or "3zn8"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.524366,-0.353142,0.774810 159.350952 center 0,0,0 model #1
    move 615.705078,306.757019,229.914872 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3zn8)] [Download the target GMM(pdb 1k4r)] [Download gmfit result file(4088352)]