Pairwise fitting pdb-1k4r on pdb-3ixy by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-3ixy by gmfit(PID:4058261).





RANK[1] Corr.Coeff:0.322

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-3ixy)

display:



color:


b'THE PSEUDO-ATOMIC STRUCTURE OF DENGUE IMMATURE VIRUS IN COMPLEX WITH  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.322
0.270
0.229
0.227
0.220
0.209
0.206
0.176
0.171
0.168







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3ixy"(PDB-format) or 
 "3ixy"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.521400,0.770542,-0.366616 178.956007 center 0,0,0 model #1
move -61.086575,108.113721,370.620278 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3ixy)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4058261)]