Pairwise fitting pdb-1k4r on pdb-3a5x by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-3a5x by gmfit(PID:4061276).





RANK[1] Corr.Coeff:0.487

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-3a5x)

display:



color:


b'L-TYPE STRAIGHT FLAGELLAR FILAMENT MADE OF FULL-LENGTH FLAGELLIN      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.487
0.371
0.309
0.300
0.293
0.252
0.190
0.183
0.182
0.171







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3a5x"(PDB-format) or 
 "3a5x"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.707560,0.134751,-0.693687 106.604701 center 0,0,0 model #1
move 132.787724,129.482830,-66.964840 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3a5x)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4061276)]